rs29097427 SNP Detail

Summary

• ID
  rs29097427
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105430596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTAATAGC ATATGTGACT
  TGGCAAATTC TCAGGAACTT CAATCACTTT AGGTTCAGAG CCAGAAAAAT GGTAGGAAGT
  TCTCTCTTTA CAAGTCTTCT GCCTCCTGTT GGCTTTACCT GTGTCAATCT TGTTCTACTC
  ACCTTGTGAA TATCCCCATG CCCACAAACT GTGTTGCCAT TGACAACATG CCCATCTTTA
  S
  TATTTGAAGG CCCAATGTTT CTCCCACCTT TTTCTAGACT TTTGACAGGA CGATAGTCTC
  CTACTTGCTG TCCATCCATG AATCCCCCAA CTGTCTACTA TTTCCTCTCA GATCCCCCAG
  ACATCACCTC CATTTTCAAT AACAGACACT AAAGTTCCCT TGTTCACCAT TATACTCCAA
  CAAAATCTTG ATATCTTTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38423099	NES09813639	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29097427					SNP	C	C	C	C	C	C	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38423099	NES09813639	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105430596 () rs orientation: forward

Symbol	Name	Function Class
Tssr164026	transcription start site region 164026	434 bp downstream