rs29097428 SNP Detail

Summary

• ID
  rs29097428
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105430258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTCCTC AGCTCCCTCC
  ACCATTTTCT CTCACGTTCC CTTCTGTAGC AGCTCTGGCA TTGTGAAGGC TTCTTGTTTT
  TTTCTTGGAA GTGTTCAGTG ATTCTTTTCT CGCTCCTTCT CTCCCAAGGT GACTAGGAAA
  TCTGTTCCTT GGATACTTCC TCTATGGAGA GTCCAAGGAG TTCTTACTGG GATGCCTGAT
  R
  TTTCCTTTTC TGTCCTCCCC TGGAAGTGTC CCACAGTTGA TGGACATCCT GACAGGGACA
  CAGGTCAGGG GTCTCAGGAG TAAAATCTGA CCTATCCAAT GCTCCAGTCC TAATATAAAT
  TGAATAACTC TCTGTGGTAT TAATAGCATA TGTGACTTGG CAAATTCTCA GGAACTTCAA
  TCACTTTAGG TTCAGAGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38423100	NES09813638	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29097428					SNP	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38423100	NES09813638	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105430258 () rs orientation: forward

Symbol	Name	Function Class
Tssr164026	transcription start site region 164026	772 bp downstream