rs29097431 SNP Detail

Summary

• ID
  rs29097431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105430093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGAATGT ATCCCTTCTC
  CAACACTCTA TGTACTAGGT GAACCATTGG ACTGGATCAC TCTTTTTATC TCTCACTTCT
  CTCTTTTACT CTCACCTATC TCTTCTCTCC TCTCCCACTT GTTCTCTCAT CTCTCTCCTT
  TTTTCCTCTC TTCTCCTCTA CTCCCTCTCC TCCTCAGCTC CCTCCACCAT TTTCTCTCAC
  R
  TTCCCTTCTG TAGCAGCTCT GGCATTGTGA AGGCTTCTTG TTTTTTTCTT GGAAGTGTTC
  AGTGATTCTT TTCTCGCTCC TTCTCTCCCA AGGTGACTAG GAAATCTGTT CCTTGGATAC
  TTCCTCTATG GAGAGTCCAA GGAGTTCTTA CTGGGATGCC TGATGTTTCC TTTTCTGTCC
  TCCCCTGGAA GTGTCCCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38423103	NES09813635	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	A	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29097431					SNP	A	A	G	A	A	A	G	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38423103	NES09813635	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105430093 () rs orientation: forward

Symbol	Name	Function Class
Tssr164026	transcription start site region 164026	937 bp downstream