rs29104346 SNP Detail

Summary

• ID
  rs29104346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:110283945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATAATTTC ACTTATCTAC
  TGTGAAAGTG TTCCATATCA TCTTTTGAAA ATATACAGTA CAGAAGTTTT ACCAATAATT
  ACTGCCTCAT TGGCATAGGC AAGGTAGAGA TCCTCCCACC TCACCCTTCA CTGCCTACAG
  CAGACAGGAG AACTGGCCCC ACCTCTCACT GGCTACAGCA CTCAGGAGAG TGTCCCTCTG
  R
  CTCTCCTGGG CAGCACAGCA GAGCTAATGT GCAGAGGAGA TGATACCCAT GATATGAGAG
  CAGAAGAGCT GCCCCTGCTC CTTGCCAGCT GAAGCATTTG GTGAACTAAT CAGAGCAGTG
  CTGGAGAGCT CGCCCTGGTG GTGAAGGCCT GGAAAAGCTG GTAGGCTCCT CAACTCAGCT
  ATCTCTCAAG CCCTGATCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38429790	NES09804421	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29104346					SNP	A	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38429790	NES09804421	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:110283945 () rs orientation: forward

Symbol	Name	Function Class
Rr2611	regulatory region 2611	within coordinates