rs29104349 SNP Detail

Summary

• ID
  rs29104349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:110283783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAATTCTT TTCAGTTTCC
  CTCCAGAATT CTTCTTTGGT CCATAAATTG TTTATCTTTA AATTAAAAGT AGTTTTTAAC
  TGGCATATAA AATTGTATTT TTGAGCTATC ATTTATTGCT TCAATCGTTT ATGTATTATG
  TAATGTTTAA ATCAAGATAT ATCAATAATT TCACTTATCT ACTGTGAAAG TGTTCCATAT
  Y
  ATCTTTTGAA AATATACAGT ACAGAAGTTT TACCAATAAT TACTGCCTCA TTGGCATAGG
  CAAGGTAGAG ATCCTCCCAC CTCACCCTTC ACTGCCTACA GCAGACAGGA GAACTGGCCC
  CACCTCTCAC TGGCTACAGC ACTCAGGAGA GTGTCCCTCT GACTCTCCTG GGCAGCACAG
  CAGAGCTAAT GTGCAGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38429793	NES09804418	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29104349					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38429793	NES09804418	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:110283783 () rs orientation: forward

Symbol	Name	Function Class
Rr2611	regulatory region 2611	18 bp proximal