rs29115386 SNP Detail

Summary

• ID
  rs29115386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:128911807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATTTTAA GCTGATTCCT
  TCTTTATGTC TTTTATTTAT GTTGTGTTAC ATTTGAAACC CAGTAATTCA AGTTTCAAAC
  TGACCAAAAA CTTCCATTTA GAGAGTATAT TCTGAAATCC CTCTCCTTTT TTTTTTAAAC
  TTTGTATTAT TCTGGGTGTG TATATATGTG TATGCTGGAT ATTCAGTTTG GAACTTAATG
  Y
  ATAGTAGCAA GTTGTTTAGT ATAGATTTAT AATTAAAACA TTACAGTATT TCTCCTTTAT
  TTAAGAGAGT CATACACCTA CATTGGTTAT TTCATGTTTC TCACAAATAC TTCTGCTTTT
  CCATTTATAC CCCTGTGATA GTTAACAGAT TATTAACTGA ACCTTGGTCT ATTCAAAGAG
  CAGGACTGTA AATAAGACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38443398	NES09790689	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29115386					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38443398	NES09790689	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:128911807 () rs orientation: forward

Symbol	Name	Function Class
Diaph2	diaphanous related formin 2	within coordinates
Rr6637	regulatory region 6637	1655 bp proximal