rs29119654 SNP Detail

Summary

• ID
  rs29119654
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:127479021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGTTGGTG GTGTGTGTGT GTGTTTTACA ATCTGTTTTG
  TGCATATTTT GTTTGGGAAG GTAGTGTGAC TTGTGGATTT TGGCATATTC ATCTTGTCGA
  S
  ATAGGTAATA GAAGTGTTTG TGAGGAGGGA GGTAGCAGCA GAAGCTATTG GTAGTCAACC
  AAAAGCACTA CACAATCACA GCGTTTCTCC TCTGATTTGC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss38444887	NES09792034	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29119654					SNP	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38444887	NES09792034	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:127479021 () rs orientation: forward

Symbol	Name	Function Class
Rr2779	regulatory region 2779	1621 bp distal
Rr9113	regulatory region 9113	222 bp distal
Rr395642	regulatory region 395642	1100 bp downstream