rs29119657 SNP Detail

Summary

• ID
  rs29119657
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:127476889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCAAGTT CTGAAAAGCT
  TAATTAAGTA TTTTTTTTTC TATTCAAAAT TCTTCCCAAA TATTTTCTGG ACTAATTGTC
  ACTGTATAAA AGAAGTTGCC ATGTATACGA GAGTAACCAT GGTATCGTTC GTATTATCTG
  CATAATGCAT GTGTAACTCA TTCCTGTGCA AAACATAATT AGAATGTAGC ATAATTCCAT
  S
  TCTCCTGAAG CATCACTATT GTATGAAATG TATGCAGTCA AACTATAGAT GCTGCCATAA
  ATGGGAAAGA AGGAAAAAAG GGAATACACA ACAAAAAAAA AAAAAGTTTA GTGTTATTTG
  ATGATTTCAT GAACACAGAA TCAGTCACAA ATCATCTGGA ATACCCTCTG TGACTTGCAG
  AATCCTCTTC ATTTTAATCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss38444890	NES09792031	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29119657					SNP	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38444890	NES09792031	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:127476889 () rs orientation: forward

Symbol	Name	Function Class
Rr2779	regulatory region 2779	within coordinates
Rr9113	regulatory region 9113	113 bp proximal
Rr395642	regulatory region 395642	128 bp upstream