rs29122738 SNP Detail

Summary

• ID
  rs29122738
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112977843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCA CTCCCGCAGC CATCACGTCG
  Y
  TCGCCTGAGT CCCTGAGAGG GGCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38878939	mCV23887933	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss324172773	CHEV_12_114252434	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29122738					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112977843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5198	CpG island 5198	within coordinates
Gm61130	predicted gene, 61130	within coordinates
Pacs2	phosphofurin acidic cluster sorting protein 2	285 bp upstream
Rr473705	regulatory region 473705	1926 bp distal
Rr473706	regulatory region 473706	within coordinates
Rr473707	regulatory region 473707	75 bp proximal
Rr473708	regulatory region 473708	141 bp proximal
Rr473709	regulatory region 473709	459 bp proximal
Rr473710	regulatory region 473710	1881 bp proximal
Tssr115451	transcription start site region 115451	162 bp upstream
Tssr115452	transcription start site region 115452	279 bp upstream
Tssr115453	transcription start site region 115453	292 bp upstream
Tssr115454	transcription start site region 115454	323 bp upstream
Tssr115455	transcription start site region 115455	336 bp upstream
Tssr117933	transcription start site region 117933	1 bp downstream