rs29122890 SNP Detail

Summary

• ID
  rs29122890
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:11341036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCGG GGTGGGAGAG ACGAGTCTTA
  Y
  GTATCTAGTC TTGAACTCTT AATCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38878362	mCV24149014	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss137129496	ENSMUSSNP574196	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29122890					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:11341036 () rs orientation: forward

Symbol	Name	Function Class
Smc6	structural maintenance of chromosomes 6	Intron
Tssr112797	transcription start site region 112797	1389 bp downstream