rs29123022 SNP Detail

Summary

• ID
  rs29123022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53860586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTCCACT GCAGGTTCAT
  TTCTTTACTT ACGTAACTGT AGTGTGACCA CCTTACTGCA GGAGGATAGA AATCCTCCCA
  GACAGAGCCC CCAGAGCAGC TTCAGTGTGA CTTGCACCCT AAACAGAGCC CATCTCAAGA
  GCCAGCTTGG TGCCCTGATG AAGTTCGGAG TCTGTTGTAT GGAAGTGTGC CTGCCTACAC
  Y
  GAAACTGCAG CCAGAAGCCC CCGATTCTTC TCCTGACCAC GCCAGAACAC AGTGCTGTAG
  AATATGTGGT CATGTCATGT ATGCCTACCT ATCTCTGCCT ATTTCTTTCA CATACATGTG
  TACACACACT TGCTTAAGTT CAGGGAGGGT CATTCATCAG CCATCTTTGC CAGCAGTGTA
  CAATTTCACC TTAAAATTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38879171	mCV22363445	ABI	CRAMUS_MOUSE	f	SNP	T	C					C		C
ss47092502	NES11250541	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	T	C		C	C	C	C	T	C	C	T	C
ss137760086	ENSMUSSNP4068849	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C							C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29123022					SNP	T	C	C	C	T	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47092502	NES11250541	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53860586 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	386 bp distal
Rr267638	regulatory region 267638	987 bp distal