rs29123565 SNP Detail

Summary

• ID
  rs29123565
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112642405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTCCCGG GGGCTGGCGA
  GATGGCTCAG CGGGTAAGAT GACTGCTCTT CCGAAGGTCC TGAGTTCAAA TCCCAGCAAC
  CACGTGGTGG CTCACAACCA CCCGTAATGA GATCTGACGC CCCCTTCTGG TGCGTCTGAA
  GACAGCTACA GTACTTATGT ATAATAATAA ATAAATCTTC AAAAAAAAAA AAACCAAAAA
  M
  CAAAAACAAA CAAACCAACC TGTGGTTCCT GACCCTCTTC CCCCCTCACA GAGGTCTTCC
  CCCCTCTCTC ACAGAGGTCT TCCTCCCTCT CATCCCTGGC AGCTTGGTAG GATGCAGGCA
  CTATCCTGAG CTAAGAGGTC TGGGCATCAG CTACATAGTG AGATATGCTC TTGAGACAGC
  TCCCAAGTTA GATGGCACCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38880976	mCV23219076	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29123565					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112642405 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	1139 bp upstream
Cpgi5173	CpG island 5173	1062 bp distal
Gm30150	predicted gene, 30150	1 bp downstream
Rr369631	regulatory region 369631	432 bp downstream
Rr473553	regulatory region 473553	1706 bp distal
Rr473554	regulatory region 473554	1550 bp distal
Rr473555	regulatory region 473555	1571 bp distal
Rr473556	regulatory region 473556	24 bp distal
Rr473557	regulatory region 473557	968 bp distal
Rr473558	regulatory region 473558	503 bp distal
Rr473559	regulatory region 473559	312 bp distal
Rr473560	regulatory region 473560	66 bp distal
Tssr115391	transcription start site region 115391	1548 bp downstream
Tssr117877	transcription start site region 117877	1944 bp upstream
Tssr117878	transcription start site region 117878	1885 bp upstream
Tssr117879	transcription start site region 117879	1696 bp upstream
Tssr117880	transcription start site region 117880	1604 bp upstream
Tssr117881	transcription start site region 117881	1586 bp upstream
Tssr117882	transcription start site region 117882	1207 bp upstream
Tssr117883	transcription start site region 117883	1157 bp upstream
Tssr117884	transcription start site region 117884	1134 bp upstream