rs29123988 SNP Detail

Summary

• ID
  rs29123988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:80518398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAACAGG AGAAGGAATT
  GATACACTGG TCAAAGAAAA TACTAAGTAT AATAAGTTTC TAAGAAAAAA AAACATCCAG
  GAAATTTGGA GCAGTATATA AAGTCTAATC CTACAAATAA TAGGAATTCC CAGATGAAAG
  CCCTGAAAAA CATCTTGTTA AAAAAGTCAT AGAAGAAAAT TTCCCTAAAA CAGAGTTGCC
  Y
  CTAAATGTCC AAGAACCTTA AAAAACAACA AATAATTGAA CTAGAAAAGA AAATTCTGTT
  GCCATATCAT AATCAAAACA TTAAATGTAT AGAACAAAGA AAGAATATTA AAAAATTGCA
  AAGGACTGAG GCTTCTTCAC TTGAGCAATT CAGCTTGTTG AAGCTTTTTG ACTTCTGTGG
  ACTGTATCTT GGGTATTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38354882	NES09692609	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29123988					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38354882	NES09692609	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:80518398 () rs orientation: forward

Symbol	Name	Function Class
Rr7859	regulatory region 7859	1967 bp distal