rs29123992 SNP Detail

Summary

• ID
  rs29123992
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:80517643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCAAGGAAC ATCATCAGCT CTTCCAGCCT TTCTGGAGGA
  CTGCTGCCTC TCAGGGCAGC AAAAAAGCCC GAAGCCATCA GGAACTAACA GCTCTGCCTG
  M
  ATCCCTGGAA GCCTTCTGCC AACTATGACA ACCAGCTCTA CCAAGAATTC CAGAGGCCTG
  CTGCCATCAA AGCCTATCAG GTCTGCCAAT ACCAGGGAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38354886	NES09692602	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C		C	C	A	C		C		A	A	C		C
ss46475982	mCV25317741	ABI	CRAMUS_MOUSE	f	SNP		A						A		C
ss134228573	ENSMUSSNP3353837	ENSEMBL	ENSEMBL_Sanger	f	SNP										C					C
ss325901782	CHEV_X_78719376	CHEVERUD	SCREENING_POP	f	SNP													C						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29123992					SNP	A	A	C	C	C	A	C	A	C	C	A	C	C	C	C	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38354886	NES09692602	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:80517643 () rs orientation: forward

Symbol	Name	Function Class
Rr7859	regulatory region 7859	1212 bp distal