rs29124304 SNP Detail

Summary

• ID
  rs29124304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:80517511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACACAAGTA AAACAGGCGA GATACGCATG CCCCAATCCT
  TTGCTCAGTG GGTCTCCTGG CAATCCCAGT AGCCATGAGA TCTTCCCTAT TACCCCTGTG
  Y
  TCCATCTTCT ACTTACTCGA GCTCTGCAGC CATCAAGGAA CATCATCAGC TCTTCCAGCC
  TTTCTGGAGG ACTGCTGCCT CTCAGGGCAG CAAAAAAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38354888	NES09692598	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	C	T		C		C	C	C		T
ss46480301	mCV25317742	ABI	CRAMUS_MOUSE	f	SNP		C						C		T
ss134228570	ENSMUSSNP5122340	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								T					C
ss325901781	CHEV_X_78719244	CHEVERUD	SCREENING_POP	f	SNP													T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29124304					SNP	C	C	T	T	T	C	T	C	C	T	C	T	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38354888	NES09692598	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:80517511 () rs orientation: forward

Symbol	Name	Function Class
Rr7859	regulatory region 7859	1080 bp distal