rs29124533 SNP Detail

Summary

• ID
  rs29124533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69838797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCT CATTACGGAT GGTTGTGAGC
  Y
  ACCATGTGGT TGCTGGGATT TGAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38878648	mCV24218140	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	C
ss137860609	ENSMUSSNP1095457	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29124533					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69838797 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	within coordinates
Cdkl1	cyclin dependent kinase like 1	756 bp upstream
Cpgi4702	CpG island 4702	623 bp distal
Rr257091	regulatory region 257091	within coordinates
Rr265514	regulatory region 265514	196 bp distal
Tssr116527	transcription start site region 116527	1750 bp upstream
Tssr116528	transcription start site region 116528	1747 bp upstream
Tssr116529	transcription start site region 116529	1725 bp upstream
Tssr116530	transcription start site region 116530	1392 bp upstream
Tssr116531	transcription start site region 116531	1288 bp upstream
Tssr116532	transcription start site region 116532	730 bp upstream
Tssr116533	transcription start site region 116533	728 bp upstream
Tssr116534	transcription start site region 116534	700 bp upstream
Tssr116535	transcription start site region 116535	685 bp upstream
Tssr116536	transcription start site region 116536	659 bp upstream