rs29125393 SNP Detail

Summary

• ID
  rs29125393
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:74849073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCA CTAACCGTGC AGCCCAAATT
  W
  CTCTCAATAC ATGCAGTAGT CCCTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38882756	mCV23602261	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A	A
ss137897198	ENSMUSSNP5645326	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss324100941	CHEV_12_75903286	CHEVERUD	SCREENING_POP	f	SNP						A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29125393					SNP	T	T	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:74849073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4766	CpG island 4766	1634 bp proximal
Tssr113890	transcription start site region 113890	1566 bp upstream
Tssr113891	transcription start site region 113891	1838 bp upstream
Tssr113892	transcription start site region 113892	1921 bp upstream
Tssr113893	transcription start site region 113893	1971 bp upstream
Tssr116673	transcription start site region 116673	1669 bp downstream