rs29125403 SNP Detail

Summary

• ID
  rs29125403
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112792902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCGC CCATGCCGCA GAAGCTCGAA
  R
  GCGCAAACCA GCTACACACT TACCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38883156	mCV23888984	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss138728290	ENSMUSSNP1948635	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss324171475	CHEV_12_114067493	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29125403					SNP	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112792902 () rs orientation: forward

Symbol	Name	Function Class
Cdca4	cell division cycle associated 4	within coordinates
Cpgi5185	CpG island 5185	within coordinates
Gm52009	predicted gene, 52009	within coordinates
Gm56552	predicted gene, 56552	303 bp upstream
Rr265126	regulatory region 265126	within coordinates
Rr387795	regulatory region 387795	within coordinates
Tssr3960	transcription start site region 3960	174 bp downstream
Tssr115439	transcription start site region 115439	121 bp downstream
Tssr115440	transcription start site region 115440	378 bp upstream
Tssr115441	transcription start site region 115441	1736 bp upstream
Tssr117911	transcription start site region 117911	176 bp upstream
Tssr117912	transcription start site region 117912	69 bp downstream
Tssr117913	transcription start site region 117913	204 bp downstream