rs29125495 SNP Detail

Summary

• ID
  rs29125495
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3842565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGATGGA GCATTTAAAA
  TGGCTCCTGA AGCCAGGTGT GGGGACACAT GCATGCAGTC CCAACATTTG CTTCTCATGA
  TGGACGAGGC TTGGAGTCGA GAGGGGTGGT AGCCTTTTCC CTGGTGGGAC GGCCAAGACA
  TCGCCAGCTC CTCCCCTAGA GAGACTGACT GGAGACCCTC GAACTACATC AAGCACAGAA
  Y
  TGACACAGCC AGGGTTCACT CTGCCCCCGA TTCTTTTTTT TTTTTTTTAA GATTTATTTA
  TTTATTTAAT GTAAGTACAC TTTAGCTGTC CTCAGACACT CCAGAAGAGG GAGTCAGATC
  TCATTACCGA TGGTTGTGAG CCACCATGTG GTTGCTGGGA TTTGAACTCC TGACCTTCGG
  AAGAGCAGTC GGGTGCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38877478	mCV25180845	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss61337746	NES16944867	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	C	C		C	C	C	C		C	C	C	C		C
ss137098008	ENSMUSSNP6825152	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss323872815	CHEV_12_3792565	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29125495					SNP	T	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61337746	NES16944867	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3842565 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4361	CpG island 4361	370 bp distal
Gm60243	predicted gene, 60243	33 bp downstream
Rr403217	regulatory region 403217	445 bp downstream