rs29125642 SNP Detail

Summary

• ID
  rs29125642
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101046117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATG AATTGCTTAA AGAGGCCCTG
  R
  CACACACATA GGAGGTACTC AATAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38883174	mCV23332001	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss137998128	ENSMUSSNP1516548	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss324139378	CHEV_12_102318068	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29125642					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101046117 () rs orientation: forward

Symbol	Name	Function Class
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	within coordinates
Rr254052	regulatory region 254052	84 bp proximal
Rr264939	regulatory region 264939	483 bp proximal