rs29125827 SNP Detail

Summary

• ID
  rs29125827
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25147012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAT TGACTGACAG CTTATCGCTG
  K
  TTTTAAAAGA AAATTCTGTT ACGTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38882314	mCV22302935	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss137401614	ENSMUSSNP4967407	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss323938305	CHEV_12_25781878	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29125827					SNP	G	G	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25147012 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	252 bp distal
Cpgi4501	CpG island 4501	1318 bp proximal
Gm59395	predicted gene, 59395	within coordinates
Id2	inhibitor of DNA binding 2	921 bp upstream
Rr403250	regulatory region 403250	650 bp downstream
Tssr112979	transcription start site region 112979	1274 bp downstream
Tssr112980	transcription start site region 112980	564 bp downstream
Tssr112981	transcription start site region 112981	526 bp downstream
Tssr112982	transcription start site region 112982	415 bp upstream
Tssr112983	transcription start site region 112983	1984 bp upstream
Tssr115884	transcription start site region 115884	1220 bp upstream
Tssr115885	transcription start site region 115885	917 bp upstream
Tssr115886	transcription start site region 115886	226 bp downstream