rs29126071 SNP Detail

Summary

• ID
  rs29126071
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:27385959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAA AACAGTCCAT TCAAACAAGG
  R
  TGTTACAGAA CAAATGGGAA CAACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38883414	mCV22641550	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss137464400	ENSMUSSNP5113872	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss323959673	CHEV_12_28020825	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29126071					SNP	A	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27385959 () rs orientation: forward

Symbol	Name	Function Class
Rr464223	regulatory region 464223	1973 bp distal
Rr464224	regulatory region 464224	within coordinates
Rr464225	regulatory region 464225	952 bp proximal
Rr464226	regulatory region 464226	1834 bp proximal
Sox11	SRY (sex determining region Y)-box 11	mRNA-UTR
Tssr113042	transcription start site region 113042	253 bp upstream
Tssr113043	transcription start site region 113043	409 bp upstream
Tssr115960	transcription start site region 115960	1181 bp upstream
Tssr115961	transcription start site region 115961	816 bp upstream
Tssr115962	transcription start site region 115962	375 bp upstream
Tssr115963	transcription start site region 115963	93 bp downstream
Tssr115964	transcription start site region 115964	444 bp downstream
Tssr115965	transcription start site region 115965	507 bp downstream
Tssr115966	transcription start site region 115966	596 bp downstream
Tssr115967	transcription start site region 115967	868 bp downstream
Tssr115968	transcription start site region 115968	882 bp downstream
Tssr115969	transcription start site region 115969	959 bp downstream
Tssr115970	transcription start site region 115970	984 bp downstream
Tssr115971	transcription start site region 115971	1027 bp downstream
Tssr115972	transcription start site region 115972	1161 bp downstream
Tssr115973	transcription start site region 115973	1527 bp downstream
Tssr115974	transcription start site region 115974	1575 bp downstream
Tssr115975	transcription start site region 115975	1615 bp downstream
Tssr115976	transcription start site region 115976	1637 bp downstream
Tssr115977	transcription start site region 115977	1651 bp downstream