rs29126123 SNP Detail

Summary

• ID
  rs29126123
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25144558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA AAGAGAAAGT AAAAAGAAAA
  R
  AAAAAGTCCC CAAATGCCTG CAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38882638	mCV22302990	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss137401575	ENSMUSSNP6734250	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss323938293	CHEV_12_25779424	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29126123					SNP	G	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25144558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4499	CpG island 4499	1525 bp distal
Cpgi4500	CpG island 4500	928 bp proximal
Gm59395	predicted gene, 59395	1901 bp upstream
Id2	inhibitor of DNA binding 2	within coordinates
Rr369501	regulatory region 369501	1333 bp downstream
Rr403250	regulatory region 403250	1503 bp upstream
Tssr112979	transcription start site region 112979	1158 bp upstream
Tssr112980	transcription start site region 112980	1878 bp upstream
Tssr112981	transcription start site region 112981	1893 bp upstream
Tssr115883	transcription start site region 115883	29 bp upstream
Tssr115884	transcription start site region 115884	1162 bp downstream
Tssr115885	transcription start site region 115885	1521 bp downstream