rs29126689 SNP Detail

Summary

• ID
  rs29126689
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107905766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGT AAGACCCAAG AGCCCACCAA
  M
  AACAGTATGC AGAAATCCAG CAGTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38886746	mCV22713457	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		C
ss47276580	NES11394464	PERLEGEN	MM_PANEL2	f	SNP	A		A	C	A	A	C		A	C	C	A		C		C	C	C		A
ss138671253	ENSMUSSNP914595	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							C					C
ss324151914	CHEV_12_109177717	CHEVERUD	SCREENING_POP	f	SNP													C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29126689					SNP	A	A	A	C	A	A	C	A	A	C	C	A	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47276580	NES11394464	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107905766 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr387761	regulatory region 387761	1177 bp downstream
Tssr117636	transcription start site region 117636	845 bp upstream
Tssr117637	transcription start site region 117637	816 bp upstream
Tssr117638	transcription start site region 117638	758 bp upstream
Tssr117639	transcription start site region 117639	739 bp upstream
Tssr117640	transcription start site region 117640	723 bp upstream
Tssr117641	transcription start site region 117641	706 bp upstream
Tssr117642	transcription start site region 117642	668 bp upstream
Tssr117643	transcription start site region 117643	549 bp upstream
Tssr117644	transcription start site region 117644	433 bp upstream
Tssr117645	transcription start site region 117645	384 bp upstream
Tssr117646	transcription start site region 117646	366 bp upstream
Tssr117647	transcription start site region 117647	354 bp upstream
Tssr117648	transcription start site region 117648	284 bp upstream
Tssr117649	transcription start site region 117649	258 bp upstream
Tssr117650	transcription start site region 117650	196 bp upstream