rs29126825 SNP Detail

Summary

• ID
  rs29126825
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25147588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGCAATGC CTCCTGCGAC TCAGCGACAG TGTTCGATTG
  ACGACTCGCC TCTGTTATTA AGCCTGGAAG TGATTTACTA TCTGAGTCCC CCCCCCCCCC
  M
  ACAGTTCGAG CCTCTTGATG TACTTTGTGT GCATGTGTTT CTGTCACATA CGTGCCACAG
  CGGAACAGAT TTTGTTTTGA CACTTTTGGT TCATGATGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss38884161	mCV22302924	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29126825					SNP	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25147588 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	828 bp distal
Cpgi4501	CpG island 4501	742 bp proximal
Cpgi4502	CpG island 4502	1993 bp proximal
Gm59395	predicted gene, 59395	334 bp downstream
Gm59396	predicted gene, 59396	1628 bp downstream
Id2	inhibitor of DNA binding 2	1497 bp upstream
Rr403250	regulatory region 403250	1226 bp downstream
Tssr112979	transcription start site region 112979	1850 bp downstream
Tssr112980	transcription start site region 112980	1140 bp downstream
Tssr112981	transcription start site region 112981	1102 bp downstream
Tssr112982	transcription start site region 112982	150 bp downstream
Tssr112983	transcription start site region 112983	1408 bp upstream
Tssr115884	transcription start site region 115884	1796 bp upstream
Tssr115885	transcription start site region 115885	1493 bp upstream
Tssr115886	transcription start site region 115886	306 bp upstream