rs29126970 SNP Detail

Summary

• ID
  rs29126970
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53859313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATTTTC TCGGTAAACT
  TATCTATTCT CTGGGAAGAG GGGGAGAAAA AAAAGGAATG TACATTCCCG GAGAAGAAGA
  AAACAGGTCT CACCCACCTC CCCCGTTCTA GTAAAGATCT CTGTAAACAC TGCCCTGGAA
  ACTGGAGGCA GGGGGATTCA GGACAGGGAA TGAGAAAATA AAATGTAAAC ATAAAACAGG
  M
  ACAGGCCTAA AAGTAAAACG GCCTGCGGGT CTACTGGGGA ACACCACTCT CCAGCCAAGG
  GAACCCGGCT CACAGGACTC CTGTTTGCAG AGAGCTGGGC ACTTCTCTGT GCTGCTGCCT
  CATATGGCAT CTTTTTATTA ACCTCCTGTT TCATGTGTTT ATTTTCCCAG TAAGCTTTTT
  TTTTCTTTCC CTCCCCGTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38884037	mCV22363456	ABI	CRAMUS_MOUSE	f	SNP	A	C				C
ss47092472	NES11250504	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C		C	C	C	A	C	C	A	C
ss137760068	ENSMUSSNP7026418	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29126970					SNP	A	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47092472	NES11250504	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53859313 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	688 bp proximal
Rr267638	regulatory region 267638	within coordinates