rs29127443 SNP Detail

Summary

• ID
  rs29127443
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25147419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTC CGGTGATGTA GAGGCGGTAA
  R
  ATCCGTCCAT CTCAGTTTGG AGACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38891939	mCV22302933	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss137401620	ENSMUSSNP5350105	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss323938308	CHEV_12_25782285	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29127443					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25147419 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	659 bp distal
Cpgi4501	CpG island 4501	911 bp proximal
Gm59395	predicted gene, 59395	165 bp downstream
Gm59396	predicted gene, 59396	1797 bp downstream
Id2	inhibitor of DNA binding 2	1328 bp upstream
Rr403250	regulatory region 403250	1057 bp downstream
Rr463954	regulatory region 463954	950 bp distal
Rr463955	regulatory region 463955	291 bp distal
Rr463956	regulatory region 463956	within coordinates
Rr463957	regulatory region 463957	723 bp proximal
Tssr112979	transcription start site region 112979	1681 bp downstream
Tssr112980	transcription start site region 112980	971 bp downstream
Tssr112981	transcription start site region 112981	933 bp downstream
Tssr112982	transcription start site region 112982	8 bp upstream
Tssr112983	transcription start site region 112983	1577 bp upstream
Tssr115884	transcription start site region 115884	1627 bp upstream
Tssr115885	transcription start site region 115885	1324 bp upstream
Tssr115886	transcription start site region 115886	137 bp upstream