rs29127824 SNP Detail

Summary

• ID
  rs29127824
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:82293949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG AATTTTTGGT GAAAGGCACC
  W
  CAGCAGTGGC CTAGGGCTGT GCCTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38892319	mCV23642070	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss137922570	ENSMUSSNP427819	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
ss324112461	CHEV_12_83348162	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29127824					SNP	A	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:82293949 () rs orientation: forward

Symbol	Name	Function Class
Rr403397	regulatory region 403397	1435 bp downstream
Rr469247	regulatory region 469247	1365 bp distal
Rr469248	regulatory region 469248	282 bp proximal
Sipa1l1	signal-induced proliferation-associated 1 like 1	Intron
Tssr114222	transcription start site region 114222	1648 bp downstream
Tssr114223	transcription start site region 114223	1474 bp downstream
Tssr114224	transcription start site region 114224	1430 bp downstream
Tssr114225	transcription start site region 114225	1360 bp downstream
Tssr114226	transcription start site region 114226	506 bp downstream
Tssr114227	transcription start site region 114227	394 bp downstream
Tssr116943	transcription start site region 116943	1767 bp upstream