rs29127988 SNP Detail

Summary

• ID
  rs29127988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:101847377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATAGACCCT AAAAGAGAAC CCACTATTCC CACTTTACTA
  AGCCAGTATA GTTTTTAAAT CCATTCTAAA AACTAATTTA GACCCACAGA TAAGTATCAA
  Y
  TTCACCCCTC AAAGATGCTT ATTTTTGCAG TGGGTAGAGA TGATTTCACA ACTAGCCAAA
  ATAAAGAAAA CAAGCTAACA TGAGGTACCC ATACAGAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38888950	mCV22298727	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss138002636	ENSMUSSNP1032300	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29127988					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101847377 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Trip11	thyroid hormone receptor interactor 11			Intron
				Noncoding-Transcript-Variant
Tssr117378	transcription start site region 117378			568 bp upstream