rs29129329 SNP Detail

Summary

• ID
  rs29129329
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:65207615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTTATA TCCCTTTGAC
  ATTTTTTCAG TAGGGCCTTA TTATGTAGTC TAGATTGGCC TCTAGAATAC TCCTGAATAC
  TGGGATTATA GGAATAAATC ACCATGCCCA GCTTTTGAAA TAATGGTCAG GCCTTTAAAG
  AAAGGAAAGT TTGTTGAGAA ATGAAAGTTT TTCAACTAGA TAAATAAAGA CTAGCAGTAC
  W
  ATTTGTATTT TACTCTGATT TATAGTTTAA GTCTTTTATA TTTAATGCAT TTTTAAATAC
  AGAAGTAAGC TTTTTTTGAT ATATAAAGAG AACACTTAAA ATTTGTGCCA AAGAAAAGGA
  TCATTTTTAT GTGTGCACAT TAGACAAAGA GTCATCAGAA TCTCAAAGAC AGGAACTTAT
  CTGCTCTTAA ATCCTATTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38884675	mCV23638440	ABI	CRAMUS_MOUSE	f	SNP		T	A					T		T
ss52441736	NES15414783	PERLEGEN	MM_PANEL2	f	SNP	T			T	A	T	A		T	T	T	T		T	T	T
ss137833016	ENSMUSSNP7109933	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A							T
ss324072237	CHEV_12_66261828	CHEVERUD	SCREENING_POP	f	SNP													T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29129329					SNP	T	T	A	T	A	T	A	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52441736	NES15414783	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:65207615 () rs orientation: forward

Symbol	Name	Function Class
Mis18bp1	MIS18 binding protein 1	within coordinates
Tssr116466	transcription start site region 116466	1636 bp upstream