rs29129381 SNP Detail

Summary

• ID
  rs29129381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:26495317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACT GTATTCTAAT AACAACAGTC
  Y
  GTAGATAGCC AGAAGATGTA GCTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss38889443	mCV24521341	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss137439012	ENSMUSSNP650478	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29129381					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26495317 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	929 bp distal
Rr464137	regulatory region 464137	1057 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	mRNA-UTR
Tssr112998	transcription start site region 112998	1565 bp downstream
Tssr112999	transcription start site region 112999	1500 bp downstream
Tssr113000	transcription start site region 113000	1399 bp downstream
Tssr113001	transcription start site region 113001	912 bp downstream
Tssr113002	transcription start site region 113002	888 bp downstream
Tssr113003	transcription start site region 113003	800 bp downstream
Tssr113004	transcription start site region 113004	749 bp downstream
Tssr113005	transcription start site region 113005	740 bp downstream
Tssr113006	transcription start site region 113006	373 bp downstream
Tssr113007	transcription start site region 113007	283 bp downstream
Tssr113008	transcription start site region 113008	115 bp downstream
Tssr113009	transcription start site region 113009	100 bp downstream
Tssr113010	transcription start site region 113010	36 bp upstream
Tssr115905	transcription start site region 115905	1796 bp upstream
Tssr115906	transcription start site region 115906	1676 bp upstream
Tssr115907	transcription start site region 115907	1617 bp upstream
Tssr115908	transcription start site region 115908	1573 bp upstream
Tssr115909	transcription start site region 115909	1489 bp upstream
Tssr115910	transcription start site region 115910	1435 bp upstream
Tssr115911	transcription start site region 115911	1387 bp upstream
Tssr115912	transcription start site region 115912	1373 bp upstream
Tssr115913	transcription start site region 115913	1338 bp upstream
Tssr115914	transcription start site region 115914	1290 bp upstream
Tssr115915	transcription start site region 115915	1247 bp upstream
Tssr115916	transcription start site region 115916	1206 bp upstream
Tssr115917	transcription start site region 115917	1156 bp upstream
Tssr115918	transcription start site region 115918	1141 bp upstream
Tssr115919	transcription start site region 115919	1110 bp upstream
Tssr115920	transcription start site region 115920	1078 bp upstream
Tssr115921	transcription start site region 115921	702 bp upstream
Tssr115922	transcription start site region 115922	677 bp upstream
Tssr115923	transcription start site region 115923	584 bp upstream
Tssr115924	transcription start site region 115924	524 bp upstream
Tssr115925	transcription start site region 115925	509 bp upstream
Tssr115926	transcription start site region 115926	158 bp upstream
Tssr115927	transcription start site region 115927	117 bp upstream
Tssr115928	transcription start site region 115928	1854 bp downstream
Tssr115929	transcription start site region 115929	1884 bp downstream