rs29129798 SNP Detail

Summary

• ID
  rs29129798
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108144651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGGTCTGC AAAGGCAAGA TGGCTGTCAA CATCCTGTTC
  AAATGTGTTT ACTTCGGTAA CAACACCGTT TTCGTTTAGA AATGGATTAC AGCATGTCCC
  R
  AGTCATCTTT ACGCGTGCAC CCCTCCAGAA ACGCACCAAC GTCCTCTCCC GACACGACGC
  GGAGGGGGTG AGGCCCCTCG GCAGCCAGTG GCGCACGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss38889851	mCV25195835	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss138673151	ENSMUSSNP4955699	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29129798					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108144651 () rs orientation: forward

Symbol	Name	Function Class
Ccnk	cyclin K	1187 bp upstream
Cpgi5076	CpG island 5076	within coordinates
Rr403488	regulatory region 403488	937 bp upstream
Setd3	SET domain containing 3	within coordinates
Tssr114948	transcription start site region 114948	91 bp upstream
Tssr114949	transcription start site region 114949	459 bp upstream
Tssr114950	transcription start site region 114950	741 bp upstream
Tssr114951	transcription start site region 114951	744 bp upstream
Tssr114952	transcription start site region 114952	1151 bp upstream
Tssr114953	transcription start site region 114953	1401 bp upstream
Tssr114954	transcription start site region 114954	1516 bp upstream
Tssr117676	transcription start site region 117676	818 bp downstream
Tssr117677	transcription start site region 117677	845 bp downstream