rs29129861 SNP Detail

Summary

• ID
  rs29129861
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101939654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGG GCCAACTAAC TGCTTAAGGA
  M
  TATACTCCTG GCGGGTGCTT ATGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38892435	mCV24967447	ABI	CRAMUS_MOUSE	f	SNP		C	C				C		A
ss47246855	NES11398789	PERLEGEN	MM_PANEL2	f	SNP	C		C	A	A	C		A	A	C	A	A	A	A
ss138002872	ENSMUSSNP6464450	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29129861					SNP	C	C	C	A	A	C	C	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47246855	NES11398789	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101939654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5001	CpG island 5001	1944 bp proximal
Gm59441	predicted gene, 59441	within coordinates
Ndufb1	NADH:ubiquinone oxidoreductase subunit B1	within coordinates
Rr387709	regulatory region 387709	1738 bp upstream
Tssr114729	transcription start site region 114729	1971 bp upstream
Tssr117382	transcription start site region 117382	1532 bp upstream