rs29130417 SNP Detail

Summary

• ID
  rs29130417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109679683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCT GTGGTTACCC AAAATGGTGG
  Y
  AAGTCCTATA GCCAGTCTCT ACTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38884713	mCV24948312	ABI	CRAMUS_MOUSE	f	SNP	T	C				T		C
ss51053013	NES14374825	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C		C	C	T	C		C	T		C
ss138683784	ENSMUSSNP656716	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss324156183	CHEV_12_110951459	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29130417					SNP	T	C	T	T	C	T	C	C	T	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51053013	NES14374825	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109679683 () rs orientation: forward

Symbol	Name	Function Class
B830012L14Rik	RIKEN cDNA B830012L14 gene	within coordinates
Gm54365	predicted gene, 54365	1359 bp upstream
Mir323	microRNA 323	656 bp downstream
Mir329	microRNA 329	232 bp upstream
Mir380	microRNA 380	1386 bp downstream
Mir758	microRNA 758	359 bp downstream
Mir1197	microRNA 1197	813 bp downstream
Mirc6	microRNA cluster 6, including Mir379 through Mir544	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc44	microRNA cluster 44, including Mir1197 through Mir758	359 bp distal
Rr262534	regulatory region 262534	528 bp distal