rs29131887 SNP Detail

Summary

• ID
  rs29131887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25145499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCA TGCTACAGCG CAGATCCAGA
  Y
  GCAACCCACA CAGAACTTAT AAGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38894741	mCV22302969	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss137401593	ENSMUSSNP51404	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss323938298	CHEV_12_25780365	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29131887					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25145499 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	within coordinates
Gm59395	predicted gene, 59395	960 bp upstream
Id2	inhibitor of DNA binding 2	within coordinates
Rr403250	regulatory region 403250	562 bp upstream
Tssr112979	transcription start site region 112979	217 bp upstream
Tssr112980	transcription start site region 112980	937 bp upstream
Tssr112981	transcription start site region 112981	952 bp upstream
Tssr112982	transcription start site region 112982	1928 bp upstream
Tssr115883	transcription start site region 115883	970 bp upstream
Tssr115884	transcription start site region 115884	221 bp downstream
Tssr115885	transcription start site region 115885	580 bp downstream
Tssr115886	transcription start site region 115886	1739 bp downstream