rs29132460 SNP Detail

Summary

• ID
  rs29132460
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:78795059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCACAGAG GGACAGTTGT
  CTACGACATG TGCCCCTGAG AAAACTCAAC AGGCTGAAGC AATGGATTTA GGTCCAGCAG
  AAGAGGTTTC TACATAGAAC ATATTTCTGT TTGCTCCAAA TCCAGTTCCT CGCGCACACT
  TTCATAGCAC TTTCCGTGCC CACCCTTCCC AGATGGTGGC ATAGGTGTGT CCTGACAGCA
  W
  GGACTCGCGC TGGGACTAGC CTAAGTAACT CCCAATCCTC TCCGGAGAAT TCTGTGACAA
  CTGTGGCCTT TGACATCCTT CCTGGTTTTC AGAAAGGAGT CGTCTGTGGA ATCAGGGAAT
  TGTGTGGAAC TTTATACACA ACCAGGTGTT GGCGTCACGG TTGTTTTGAG CATTAGCATT
  TTTGATGTGC CTGACAGGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38895369	mCV25067874	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T	T
ss137913137	ENSMUSSNP3967072	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29132460					SNP	T	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:78795059 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4794	CpG island 4794	32 bp proximal
Gm60106	predicted gene, 60106	within coordinates
Pals1	protein associated with LIN7 1, MAGUK family member	622 bp upstream
Rr403364	regulatory region 403364	271 bp upstream
Rr468462	regulatory region 468462	217 bp proximal
Rr468463	regulatory region 468463	718 bp proximal
Rr468464	regulatory region 468464	1285 bp proximal
Tssr114060	transcription start site region 114060	580 bp upstream
Tssr114061	transcription start site region 114061	670 bp upstream
Tssr114062	transcription start site region 114062	711 bp upstream
Tssr114063	transcription start site region 114063	742 bp upstream
Tssr116791	transcription start site region 116791	1304 bp downstream