rs29133295 SNP Detail

Summary

• ID
  rs29133295
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112792119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGT CCAGCTCAGC TCTGCCATCT
  S
  GTATGTCAGA TACAAAGGCC ACCAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38903964	mCV23888993	ABI	CRAMUS_MOUSE	f	SNP	C	G	C	C
ss138728281	ENSMUSSNP6982119	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G		C
ss324171472	CHEV_12_114066710	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29133295					SNP	C	G	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112792119 () rs orientation: forward

Symbol	Name	Function Class
Cdca4	cell division cycle associated 4	within coordinates
Cpgi5185	CpG island 5185	174 bp proximal
Gm52009	predicted gene, 52009	within coordinates
Gm56552	predicted gene, 56552	1086 bp upstream
Rr265126	regulatory region 265126	within coordinates
Rr387795	regulatory region 387795	336 bp upstream
Tssr3960	transcription start site region 3960	957 bp downstream
Tssr115439	transcription start site region 115439	649 bp upstream
Tssr115440	transcription start site region 115440	1161 bp upstream
Tssr117911	transcription start site region 117911	526 bp downstream
Tssr117912	transcription start site region 117912	852 bp downstream
Tssr117913	transcription start site region 117913	987 bp downstream