rs29133635 SNP Detail

Summary

• ID
  rs29133635
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:26494765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGC TGCAGAAGTG GCATCCTCAT
  K
  GCCACACCCT GGGAGGTAAA GTGTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38897017	mCV24521346	ABI	CRAMUS_MOUSE	f	SNP		T	T					G
ss52328575	NES15372020	PERLEGEN	MM_PANEL2	f	SNP	T		T	G	T	T	T		G	G	T	G	T	T	T	G	G
ss137439003	ENSMUSSNP1817382	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29133635					SNP	T	T	T	G	T	T	T	G	G	G	T	G	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52328575	NES15372020	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26494765 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	377 bp distal
Rr464137	regulatory region 464137	1609 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	mRNA-UTR
Tssr112998	transcription start site region 112998	1013 bp downstream
Tssr112999	transcription start site region 112999	948 bp downstream
Tssr113000	transcription start site region 113000	847 bp downstream
Tssr113001	transcription start site region 113001	360 bp downstream
Tssr113002	transcription start site region 113002	336 bp downstream
Tssr113003	transcription start site region 113003	248 bp downstream
Tssr113004	transcription start site region 113004	197 bp downstream
Tssr113005	transcription start site region 113005	188 bp downstream
Tssr113006	transcription start site region 113006	168 bp upstream
Tssr113007	transcription start site region 113007	252 bp upstream
Tssr113008	transcription start site region 113008	420 bp upstream
Tssr113009	transcription start site region 113009	438 bp upstream
Tssr113010	transcription start site region 113010	588 bp upstream
Tssr115902	transcription start site region 115902	1896 bp upstream
Tssr115903	transcription start site region 115903	1566 bp upstream
Tssr115904	transcription start site region 115904	1542 bp upstream
Tssr115905	transcription start site region 115905	1244 bp upstream
Tssr115906	transcription start site region 115906	1124 bp upstream
Tssr115907	transcription start site region 115907	1065 bp upstream
Tssr115908	transcription start site region 115908	1021 bp upstream
Tssr115909	transcription start site region 115909	937 bp upstream
Tssr115910	transcription start site region 115910	883 bp upstream
Tssr115911	transcription start site region 115911	835 bp upstream
Tssr115912	transcription start site region 115912	821 bp upstream
Tssr115913	transcription start site region 115913	786 bp upstream
Tssr115914	transcription start site region 115914	738 bp upstream
Tssr115915	transcription start site region 115915	695 bp upstream
Tssr115916	transcription start site region 115916	654 bp upstream
Tssr115917	transcription start site region 115917	604 bp upstream
Tssr115918	transcription start site region 115918	589 bp upstream
Tssr115919	transcription start site region 115919	558 bp upstream
Tssr115920	transcription start site region 115920	526 bp upstream
Tssr115921	transcription start site region 115921	150 bp upstream
Tssr115922	transcription start site region 115922	125 bp upstream
Tssr115923	transcription start site region 115923	32 bp upstream
Tssr115924	transcription start site region 115924	17 bp downstream
Tssr115925	transcription start site region 115925	32 bp downstream
Tssr115926	transcription start site region 115926	381 bp downstream
Tssr115927	transcription start site region 115927	425 bp downstream