rs29134430 SNP Detail

Summary

• ID
  rs29134430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57276756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGG AGAAAAATAT TCGAATATTA
  Y
  CAGCTATATC ATCTAATAGA ATTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38902836	mCV22964923	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss137780776	ENSMUSSNP4222628	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss324050324	CHEV_12_58330957	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29134430					SNP	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57276756 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4649	CpG island 4649	79 bp proximal
Mipol1	mirror-image polydactyly 1	457 bp upstream
Prps1l3	phosphoribosyl pyrophosphate synthetase 1-like 3	442 bp upstream
Rr403305	regulatory region 403305	407 bp upstream
Tg(H2-K1-Ifnb1)10Seif	transgene insertion 10, Isabelle Seif	within coordinates
Tssr113519	transcription start site region 113519	436 bp upstream
Tssr113520	transcription start site region 113520	495 bp upstream
Tssr113521	transcription start site region 113521	544 bp upstream