rs29134525 SNP Detail

Summary

• ID
  rs29134525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27386453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTTTTTT TTTTTTTCAC AGAAGAGACT ACATAAAAGA
  AGTTTGATCA AACAGTGAGG CTGGAGCCTC CACATGGGCA CATCCAGGTT GCCTAGTGGC
  Y
  GACTGCTCAT CAGGAGGCAC ACCTCAGCTC CTACCTATTG CTCTTTGTGG CTGTGGTGAA
  CTGTGTTTGT CAAGTGCCGG CAACCGGAAG TTCCCAGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38897236	mCV22640887	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss137464412	ENSMUSSNP6618247	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29134525					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27386453 () rs orientation: forward

Symbol	Name	Function Class
Rr464224	regulatory region 464224	302 bp distal
Rr464225	regulatory region 464225	458 bp proximal
Rr464226	regulatory region 464226	1340 bp proximal
Sox11	SRY (sex determining region Y)-box 11	within coordinates
Tssr113042	transcription start site region 113042	231 bp downstream
Tssr113043	transcription start site region 113043	81 bp downstream
Tssr115960	transcription start site region 115960	1675 bp upstream
Tssr115961	transcription start site region 115961	1310 bp upstream
Tssr115962	transcription start site region 115962	869 bp upstream
Tssr115963	transcription start site region 115963	390 bp upstream
Tssr115964	transcription start site region 115964	15 bp upstream
Tssr115965	transcription start site region 115965	13 bp downstream
Tssr115966	transcription start site region 115966	102 bp downstream
Tssr115967	transcription start site region 115967	374 bp downstream
Tssr115968	transcription start site region 115968	388 bp downstream
Tssr115969	transcription start site region 115969	465 bp downstream
Tssr115970	transcription start site region 115970	490 bp downstream
Tssr115971	transcription start site region 115971	533 bp downstream
Tssr115972	transcription start site region 115972	667 bp downstream
Tssr115973	transcription start site region 115973	1033 bp downstream
Tssr115974	transcription start site region 115974	1081 bp downstream
Tssr115975	transcription start site region 115975	1121 bp downstream
Tssr115976	transcription start site region 115976	1143 bp downstream
Tssr115977	transcription start site region 115977	1157 bp downstream
Tssr115978	transcription start site region 115978	1789 bp downstream
Tssr115979	transcription start site region 115979	1881 bp downstream