rs29135281 SNP Detail

Summary

• ID
  rs29135281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110809236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCTTGGGG CTATGGGTGG AGGCAGGCCG ATCTCTGCGA
  GTTCAAGGCC AGCCTGGGTT ACATAGTTCC AGCTACATAG ACTTTGGAAA ATGCTTTTAT
  Y
  CTTTGCCACT CCAGCTTTCC TGTCAGGTGA CTCTTTCCAC CAGATCTTTT GATACAGAAG
  CAGGGGGACA CCACCACTGC CCCTGCTGCA AACTGTCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38896493	mCV25034587	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss324159082	CHEV_12_112081012	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29135281					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110809236 () rs orientation: forward

Symbol	Name	Function Class
4921507G05Rik	RIKEN cDNA 4921507G05 gene	within coordinates
Cpgi5123	CpG island 5123	1637 bp distal
Cpgi5124	CpG island 5124	965 bp proximal
Cpgi5125	CpG island 5125	1787 bp proximal
Gm26912	predicted gene, 26912	within coordinates
Mok	MOK protein kinase	1863 bp upstream
Rr403503	regulatory region 403503	1667 bp downstream
Rr403504	regulatory region 403504	880 bp upstream
Rr473007	regulatory region 473007	1886 bp distal
Rr473008	regulatory region 473008	1756 bp distal
Rr473009	regulatory region 473009	1392 bp distal
Rr473010	regulatory region 473010	918 bp distal
Rr473011	regulatory region 473011	628 bp distal
Rr473012	regulatory region 473012	531 bp proximal
Rr473013	regulatory region 473013	1040 bp proximal
Tssr115236	transcription start site region 115236	1765 bp downstream
Tssr117796	transcription start site region 117796	1941 bp upstream
Tssr117797	transcription start site region 117797	1852 bp upstream