rs29135451 SNP Detail

Summary

• ID
  rs29135451
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:16860659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGT CCCTCCAAGA TGGCTTGTTT
  Y
  ATGAGCATGT GCTAAGCACC TTTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38899510	mCV22349784	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss137196009	ENSMUSSNP5991451	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323920173	CHEV_12_16817464	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29135451					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:16860659 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4441	CpG island 4441	within coordinates
E2f6	E2F transcription factor 6	273 bp upstream
Rr463370	regulatory region 463370	within coordinates
Rr463371	regulatory region 463371	330 bp proximal
Tssr112858	transcription start site region 112858	282 bp upstream
Tssr112859	transcription start site region 112859	321 bp upstream
Tssr112860	transcription start site region 112860	1733 bp upstream