rs29137424 SNP Detail

Summary

• ID
  rs29137424
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:51740401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGAGCAT ATAAGTGACT
  TCATATAACT TCAGAGAGAA AAAGAAATAC ATTTTATTTT GTCATGTCTG CTGTGTTATA
  AAGAACTAAT TCGATCTGTT ACACTTATTA CCATATTTAT GAAATGTAGT CTTTAGTAAA
  TGAAGAAATG AGGCTGGAGA GATGGCTCAG CAGTTAAGAG CACTGACTGC TCTCCTAGGC
  K
  TCCTGAGTTC AGTTCCCAGC GACCACAGTG ACTCACAGCC ATCTGAAATG GGATACAGTG
  CTCTCTTCTG GTGTGTCTGA GAGAGCAACA GTGTACTCAC ATAAGTAAAT ACATCTTTTT
  TTTTATATGA AGAAATAGTA CTGTTATCTA AGAGTTATTG ACAATCAGCA TACAGCTGGC
  TCAAGCAGTC CCATTCCTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38905560	mCV24841388	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G	G
ss137724497	ENSMUSSNP2197262	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29137424					SNP	T	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:51740401 () rs orientation: forward

Symbol	Name	Function Class
Ap4s1	adaptor-related protein complex AP-4, sigma 1	within coordinates
Cpgi4590	CpG island 4590	1063 bp distal
Gm61171	predicted gene, 61171	1029 bp downstream
Rr256575	regulatory region 256575	1800 bp proximal
Rr265419	regulatory region 265419	400 bp distal
Rr403281	regulatory region 403281	1444 bp downstream
Strn3	striatin, calmodulin binding protein 3	1721 bp upstream
Tssr113422	transcription start site region 113422	972 bp downstream
Tssr116249	transcription start site region 116249	1906 bp upstream
Tssr116250	transcription start site region 116250	1693 bp upstream
Tssr116251	transcription start site region 116251	1609 bp upstream
Tssr116252	transcription start site region 116252	1592 bp upstream
Tssr116253	transcription start site region 116253	1560 bp upstream
Tssr116254	transcription start site region 116254	1526 bp upstream