rs29137458 SNP Detail

Summary

• ID
  rs29137458
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69621742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGCAAAC CCTTGCTCAT
  CACATTTAGC CAGAAAGCGT GAGGAGGGGG CGAAAAGAAG CACAAGAAGA CGCACCGCCA
  TTCTGTCCTG CACTTAAATA ATAATGTGGA ATCAAAACCA ACCCGGTGTC ACCAACTATA
  ATCCACAGAC TGTTAGAAAT GGGAGAAGAG TTAGGCAACC AGAGGGAGAA GGTGGAAGAG
  R
  CTCAAGTCAC TGGTGAGGAG GCCTGCAATT TGCCTCTGAA TTGTAGAATC CCTCCCCCAG
  CCTTCAGTTA ACAGCGATTC TGGTTCCTAG AGTTGTTCCA CAGGTTTTGA GGTTCAGCCC
  CTCATTCTGG GCAGGACAGG CCACTCTAAC CAGAGCACTT CTCTTCCCTT CTCTCGCCCT
  CCCTGCTGGG AGGTAGTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38905368	mCV22702578	ABI	CRAMUS_MOUSE	f	SNP	A	G					G
ss51017753	NES14400711	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	A	A	G	G	G	A	G	G	A	A
ss137859514	ENSMUSSNP6977897	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G					G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29137458					SNP	A	G	G	G	A	A	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51017753	NES14400711	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69621742 () rs orientation: forward

Symbol	Name	Function Class
Rr257073	regulatory region 257073	1542 bp distal
Rr257074	regulatory region 257074	within coordinates
Rr403327	regulatory region 403327	123 bp downstream