rs29137514 SNP Detail

Summary

• ID
  rs29137514
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107905467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAT ATATTCTTCC AATGCTTGTT
  R
  CTTTTACCTC TCCCCAGGAT TAATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38906162	mCV22713447	ABI	CRAMUS_MOUSE	f	SNP		A	A					A	G
ss47276577	NES11394462	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	G		G	G		G	G	G	G		A
ss138671250	ENSMUSSNP5269021	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss324151913	CHEV_12_109177418	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29137514					SNP	A	A	A	G	A	A	G	A	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47276577	NES11394462	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107905467 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr387761	regulatory region 387761	878 bp downstream
Tssr117636	transcription start site region 117636	546 bp upstream
Tssr117637	transcription start site region 117637	517 bp upstream
Tssr117638	transcription start site region 117638	459 bp upstream
Tssr117639	transcription start site region 117639	440 bp upstream
Tssr117640	transcription start site region 117640	424 bp upstream
Tssr117641	transcription start site region 117641	407 bp upstream
Tssr117642	transcription start site region 117642	369 bp upstream
Tssr117643	transcription start site region 117643	250 bp upstream
Tssr117644	transcription start site region 117644	134 bp upstream
Tssr117645	transcription start site region 117645	85 bp upstream
Tssr117646	transcription start site region 117646	67 bp upstream
Tssr117647	transcription start site region 117647	55 bp upstream
Tssr117648	transcription start site region 117648	within coordinates
Tssr117649	transcription start site region 117649	24 bp downstream
Tssr117650	transcription start site region 117650	62 bp downstream