rs29137838 SNP Detail

Summary

• ID
  rs29137838
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:98887149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG CCCGGGAGGA GGGCCCAAGA
  M
  GAAGTTGCCT GTGTAATCCG CAAAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38909989	mCV24981748	ABI	CRAMUS_MOUSE	f	SNP		C	A					A
ss61685129	NES17645807	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	A		C	A	C	C		C	A	C		C
ss137987701	ENSMUSSNP3115007	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
ss324133997	CHEV_12_100159100	CHEVERUD	SCREENING_POP	f	SNP													A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29137838					SNP	C	C	A	A	A	C	A	A	C	A	C	C	A	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61685129	NES17645807	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:98887149 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4974	CpG island 4974	171 bp distal
Rr403444	regulatory region 403444	372 bp downstream
Rr470976	regulatory region 470976	268 bp distal
Rr470977	regulatory region 470977	459 bp distal
Rr470978	regulatory region 470978	886 bp proximal
Tssr114655	transcription start site region 114655	337 bp downstream
Tssr114656	transcription start site region 114656	271 bp downstream
Tssr114657	transcription start site region 114657	256 bp downstream
Tssr114658	transcription start site region 114658	228 bp downstream
Ttc8	tetratricopeptide repeat domain 8	within coordinates