rs29138522 SNP Detail

Summary

• ID
  rs29138522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:46867385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATT TACGGTAAAT GTTCTTAGAC
  R
  TACAAAGGCG GGCACGTATT CACCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38909633	mCV24792170	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
ss137691500	ENSMUSSNP5014913	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29138522					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:46867385 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4580	CpG island 4580	590 bp distal
Gm60470	predicted gene, 60470	25 bp upstream
Nova1	NOVA alternative splicing regulator 1	1242 bp upstream
Rr465708	regulatory region 465708	1684 bp distal
Rr465709	regulatory region 465709	1940 bp distal
Rr465710	regulatory region 465710	1183 bp distal
Rr465711	regulatory region 465711	within coordinates
Tssr116218	transcription start site region 116218	1814 bp upstream
Tssr116219	transcription start site region 116219	1665 bp upstream
Tssr116220	transcription start site region 116220	1598 bp upstream
Tssr116221	transcription start site region 116221	1576 bp upstream
Tssr116222	transcription start site region 116222	1544 bp upstream
Tssr116223	transcription start site region 116223	1506 bp upstream
Tssr116224	transcription start site region 116224	1398 bp upstream
Tssr116225	transcription start site region 116225	1353 bp upstream
Tssr116226	transcription start site region 116226	1231 bp upstream
Tssr116227	transcription start site region 116227	1104 bp upstream
Tssr116228	transcription start site region 116228	1085 bp upstream