rs29138548 SNP Detail

Summary

• ID
  rs29138548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:36268483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCT GGCTGTAGGC AAGCCTGCAG
  R
  GTCTTTTCTT TGTGGGTGGT GCCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38914007	mCV24412247	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss137628423	ENSMUSSNP2177320	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss324007791	CHEV_12_36945071	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29138548					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:36268483 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm60325	predicted gene, 60325			within coordinates
Lrrc72	leucine rich repeat containing 72			Intron
				Noncoding-Transcript-Variant
Tssr116139	transcription start site region 116139			297 bp upstream
Tssr116140	transcription start site region 116140			279 bp upstream