rs29138631 SNP Detail

Summary

• ID
  rs29138631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:91367236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGGTGG ATGAGAATGA
  AAAGTGTCTA GGATTCTAAG CAGATTCGTA AAACCAGACT GTTACCGTGC AGGCAAGGGA
  ACCTGTGTGC GCAGTTCCCA GTTATCTACA GCAGATGGCC CCAGAGCCCA GCGCCTGACT
  TCACGGAGCT GCTGGGTTTG GTGAGAGCAG CATCTCCAGA CGTTTAGTGG CGCCTCCAAG
  Y
  TGGACCGTGG CTGTTCCAGC TAGACAGCAT GGAGGATTGT CTCGCCCGGA GTGACTCGTC
  CCCCTTCAGC TGCACTCTAA GCTGTCACGG GTTGTGCTGA CTGCTCCGGA GACTTTTAAC
  CTGGAGAAGC CGAAGTTCCA CGGGACACTA GAGAGTCCCA CAACAGTCCC CTCCGTGGAG
  ACATTAGACG GAGCCCATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss38910636	mCV23722777	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29138631					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:91367236 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4953	CpG island 4953	within coordinates
Rr258556	regulatory region 258556	36 bp distal
Rr265753	regulatory region 265753	within coordinates
Tshr	thyroid stimulating hormone receptor	531 bp upstream
Tssr114585	transcription start site region 114585	10 bp downstream
Tssr114586	transcription start site region 114586	4 bp upstream
Tssr114587	transcription start site region 114587	528 bp upstream
Tssr114588	transcription start site region 114588	562 bp upstream