rs29138821 SNP Detail

Summary

• ID
  rs29138821
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:101845454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCATTTAAAA GTTGATTTAG CTCCCCAGCC TTGCCCTTTT GGAAAAAAAC AACTTTAGCT
  TTAAAGAATA ATAGATTTTC AAAAAGACAT TTTCTTCATT AAATAATTTT AAAATATAGT
  TAGCAGGAAC AAAGGCAACA AAATCCAAAG ACACTCTGAA AGACATTGAA GGGCATGTGA
  CATCTAGATA CGGTGTGGTG TCCTACACTA CCCAGCACCC TGCAGCAGCG ACGAGTGGTG
  AGTACTGTAG GACTCCAACA AGCTCGGGCT TCGGATCCTG CTGCAATGCA GCTTCATTTA
  K
  CTGAAATATG TGATACTGGG ATAAATGGAC CAGGTGGTGG TGGCGCACGC CTTTAATCCC
  AGCACTCGGG AGGCAGAGGC AGGCTCATCT CTGTGTGTTG AAGGTCAGCC TGGACTACAG
  AACAAGTTCC AGGACAGCCA GGGCTCCTCA GAGAAACCCT GTCTTAAGTA GATGAAAATT
  CTCTTCACAA TCTCTACAAC TTGTCTATAA ACCCAAAGCT ATGCTAAAAG AAGTGTTCAT
  TAGAAATGTT TTAAAAGGAG CCAGGTGTAA AGGTACATAC ATGCCTTTAA TCCAGTAGAG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38905438	mCV22298703	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29138821					SNP	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101845454 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Trip11	thyroid hormone receptor interactor 11			Intron
				Noncoding-Transcript-Variant
Tssr117378	transcription start site region 117378			1343 bp downstream